Recent Publications:
Khaled Mohammed Saifuddin, Shihao Ji, and Esra Akbas. "HyperGCL: Multi-Modal Graph Contrastive Learning via Learnable Hypergraph Views" (IJCNN'25)
Farhan Tanvir, Khaled Mohammed Saifuddin, Tanvir Hossain, Arunkumar Bagavathi, and Esra Akbas. "HeTAN: Heterogeneous Graph Triplet Attention Network for Drug Repurposing" (DSAA'24)
Farhan Tanvir, Khaled Mohammed Saifuddin, Muhammad Ifte Khairul Islam, and Esra Akbas. "DDI Prediction with Heterogeneous Information Network - Meta-Path Based Approach." (IEEE/ACM Transactions on Computational Biology and Bioinformatics. )
Tanvir Hossain, Khaled Mohammed Saifuddin, Muhammad Ifte Khairul Islam, Farhan Tanvir, and Esra Akbas. "Tackling Oversmoothing in GNN via Graph Sparsification." (ECML PKDD'24)
Khaled Mohammed Saifuddin, Corey May, Farhan Tanvir, Muhammad Ifte Khairul Islam, and Esra Akbas. "Seq-HyGAN: Sequence Classification via Hypergraph Attention Network." (ACM CIKM'23 and MLG @ KDD'23)
Khaled Mohammed Saifuddin, Esra Akbas, "Topology-guided Hypergraph Transformer Network: Unveiling Structural Insights for Improved Representations" (PhD Consortium @ KDD'23 and Stanford Graph Learning Workshop'24)
Muhammad Ifte Khairul Islam, Khaled Mohammed Saifuddin, Tanvir Hossain, Esra Akbas, "DyGL: Dynamic Graph Learning For Event Prediction"(IEEE BigData'25)
Khaled Mohammed Saifuddin, Bri Bumgardnerr, Farhan Tanvir, and Esra Akbas. "HyGNN: Drug-Drug Interaction Prediction via Hypergraph Neural Network." In 2023 IEEE International Conference on Data Engineering (ICDE’23)
Tanvir, Farhan, Khaled Mohammed Saifuddin, and Esra Akbas. "DDI Prediction via Heterogeneous Graph Attention Networks." arXiv preprint arXiv:2207.05672 (2022). In the 21st International Workshop on Data Mining on Bioinformatics (ACM-BCB'23 and BioKDD’22)
Khaled Mohammed Saifuddin, Muhammad Ifte Khairul Islam, and Esra Akbas. "Drug Abuse Detection in Twitter-sphere: Graph-Based Approach." In 2021 IEEE International Conference on Big Data (Big Data), pp. 4136-4145. IEEE, 2021. (IEEE BigData-21)
Khaled Mohammed Saifuddin, Esra Akbas, Max Khanov, and Jason Beaman. "Effects of COVID-19 on individuals in Opioid Addiction Recovery." In 2021 20th IEEE International Conference on Machine Learning and Applications (ICMLA), pp. 1333-1340. IEEE, 2021. (ICMLA-21)
Bumgardner, Bri, Farhan Tanvir, Khaled Mohammed Saifuddin, and Esra Akbas. "Drug-Drug Interaction Prediction: a Purely SMILES Based Approach." In 2021 IEEE International Conference on Big Data (Big Data), pp. 5571-5579. IEEE, 2021. (IEEE BigData-21)